2V59

CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH POTENT INHIBITOR 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 2V59

Classification: LIGASE

Total Structure Weight: 99368.94

Macromolecule Entities
Molecule Chains Length Organism Details
BIOTIN CARBOXYLASE A, B 449 Escherichia coli EC#: 6.3.4.14 IUBMB
Gene Name(s): accC fabG b3256 JW3224
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LZK
Query on LZK

A, B 6-(2,6-DIMETHOXYPHENYL)PYRIDO[2,3-D]PYRIMIDINE- 2,7-DIAMINE
C15 H15 N5 O2
LRPHIAJXODIASX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LZK N/A in BindingDB
Kd: 6.53 nM  BindingMOAD
Kd: 6.53 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 84.19 α = 90.00
b = 106.20 β = 90.00
c = 123.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-02
  • Released Date: 2009-01-13
  • Deposition author(s): Mochalkin, I., Miller, J.R.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4