2V58

CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH POTENT INHIBITOR 1

Structural Biology Knowledgebase: 2V58 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2V58

Classification: LIGASE

Total Structure Weight: 99635.32

Macromolecule Entities
Molecule Chains Length Organism Details
BIOTIN CARBOXYLASE A, B 449 Escherichia coli EC#: 6.3.4.14 IUBMB
Gene Name(s): accC fabG b3256 JW3224
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LZJ
Query on LZJ

A, B 6-(2,6-dibromophenyl)pyrido[2,3-d]pyrimidine- 2,7-diamine
C13 H9 Br2 N5
HGIPWJYTPOHUGK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LZJ IC50: <1 nM (100) BindingDB

Kd: 0.82 nM  BindingMOAD
Kd: 0.82 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.193
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.21 α = 90.00
b = 106.61 β = 90.00
c = 122.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-02
  • Released Date: 2009-01-13
  • Deposition author(s): Mochalkin, I., Miller, J.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4