Crystal structures of cyclophilin A complexed with cyclosporin A and N-methyl-4-[(E)-2-butenyl]-4,4-dimethylthreonine cyclosporin A
2RMB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase/immunosuppressant
    Structure Weight: 192712.70
    Molecule: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
    Polymer: 1 Type: protein Length: 165
    Chains: A, C, E, G, I, K, M, O, Q, S
    EC#: 5.2.1.8   
    Organism: Homo sapiens
    Gene Names: Gene View for PPIA CYPA
    UniProtKB: Protein Feature View | Search PDB | P62937  
    Molecule: CYCLOSPORIN A
    Polymer: 2 Type: protein Length: 11
    Chains: B, D, F, H, J, L, N, P, R, T
    Details: 3-HYDROXY-4,4-DIMETHYL-2-(METHYLAMINO)-6- OCTENOIC ACID AT POSITION 5
    Organism: Tolypocladium inflatum
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct (Tolypocladium inflatum)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1BCK   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN C 
    1C5F   CRYSTAL STRUCTURE OF THE CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI COMPLEXED WITH CYCLOSPORIN A 
    1CSA   SOLUTION STRUCTURE OF E.COLI CYCLOPHILIN (F112W) COMPLEXED WITH CYCLOSPORIN A 
    1CWA   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A 
    1CWB   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5 
    1CWC   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8 
    1CWF   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN D 
    1CWH   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A MODIFIED AT POSITION 7 
    1CWI   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITION 7 
    1CWJ   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7. 
    1CWK   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7. 
    1CWL   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8 
    1CWM   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8 
    1CWO   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH NODIFIED CYCLOSPORIN C AT POSITIONS 1, AND 9 
    1CYA   SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    1CYB   SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    1CYN   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN B COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 1 
    1M63   CRYSTAL STRUCTURE OF CALCINEURIN-CYCLOPHILIN-CYCLOSPORIN COMPLEX 
    1MF8   CRYSTAL STRUCTURE OF HUMAN CALCINEURIN COMPLEXED WITH HUMAN CYCLOPHILIN AND CYCLOSPORIN A 
    1MIK   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 6 
    1QNG   CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    1QNH   CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN (DOUBLE MUTANT) COMPLEXED WITH CYCLOSPORIN A 
    1XQ7   CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    2ESL   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A 
    2OJU   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN J COMPLEXED WITH CYCLOSPORIN A 
    2POY   CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM IOWA II CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A 
    2RMA   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A 
    2RMC   CRYSTAL STRUCTURE OF MURINE CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A 
    2WFJ   CRYSTAL STRUCTURE OF THE PPIASE DOMAIN OF HUMAN CYCLOPHILIN G COMPLEXED WITH CYCLOSPORIN A 
    2X2C   CRYSTAL STRUCTURE OF HUMAN ACETYL-CYPA COMPLEXED WITH CYCLOSPORINE A 
    2X7K   CRYSTAL STRUCTURE OF PPIL1 COMPLEXED WITH CYCLOSPORINE A 
    2Z6W   CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN D IN COMPLEX WITH CYCLOSPORIN A 
    3BO7   CRYSTAL STRUCTURE OF CYCLOSPHILIN A FROM TOXOPLASMA GONDII COMPLEXED WIT CYCLOSPORIN A 
    3CYS   SOLUTION STRUCTURE OF THE HUMAN CYCLOSPORIN A COMPLEXED WITH CYCLOSPORIN A 
    3EOV   CRYSTAL STRUCTURE OF CYCLOPHILIN FROM LEISHMANIA DONOVANI COMPLEXED WITH CYCLOSPORIN A 
     
  •   Biologically Interesting Molecules (BIRD) Hide
    Identifier Image Name Type Class Chain ID  
    PRD_000765 Search  PRD_000765 CYCLOSPORIN A, 5 mutation Cyclic peptide Immunosuppressant B,D,F,H,J,L,N,P,R,T
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DAL
    Search 
    DAL C3 H7 N O2 dPeptideLinking
    MLE
    Search 
    MLE C7 H15 N O2 LEU lPeptideLinking
    MVA
    Search 
    MVA C6 H13 N O2 VAL lPeptideLinking
    DMT
    Search 
    DMT C11 H21 N O3 lPeptideLinking
    ABA
    Search 
    ABA C4 H9 N O2 ALA lPeptideLinking
    SAR
    Search 
    SAR C3 H7 N O2 GLY glycine
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA 1.18 (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Ke, H.,  Mayrose, D.

    Deposition:   1994-01-07
    Release:   1995-02-07
    Last Modified (REVDAT):   2011-07-27
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Other
    2011-07-27
    Biological assembly
    2011-07-27
    Atom nomenclature
    2011-07-27
    Binding sites and description
    2011-07-27
    Non-polymer description
    2011-07-27
    Function and keywords
    2011-07-27
    Linkage
    2011-07-27
    Sequence database correspondence
    2011-07-27
    Polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.10
    R-Value: 0.184 (obs.)
    R-Free: n/a
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 72.60 α = 90.00 
    b = 160.60 β = 90.90 
    c = 95.30 γ = 90.00