2R59

Leukotriene A4 hydrolase complexed with inhibitor RB3041

Structural Biology Knowledgebase: 2R59 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2R59

Classification: HYDROLASE

Total Structure Weight: 70855.40

Macromolecule Entities
Molecule Chains Length Organism Details
Leukotriene A-4 hydrolase A 616 Homo sapiens EC#: 3.3.2.6 IUBMB
Gene Name(s): LTA4H Gene View LTA4

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PH0
Query on PH0

A N-{(2S)-3-[(R)-[(1R)-1-amino-2-phenylethyl](hydroxy)phosphoryl]- 2-benzylpropanoyl}-L-phenylalanine
C27 H31 N2 O5 P
XNPYGVCNHOXQRJ-DSNGMDLFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
YB
Query on YB

A YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PH0 N/A in BindingDB
Ki: 6.5 nM  BindingMOAD
Ki: 6.5 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.175
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.21 α = 90.00
b = 87.23 β = 90.00
c = 99.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-03
  • Released Date: 2008-08-12
  • Deposition author(s): Tholander, F., Haeggstrom, J.Z., Thunnissen, M., Muroya, A., Roques, B.P., Fournie-Zaluski, M.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4