2R4H

Crystal structure of a C1190S mutant of the 6th PDZ domain of human membrane associated guanylate kinase

Structural Biology Knowledgebase: 2R4H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 2R4H

Classification: TRANSFERASE

Total Structure Weight: 39269.68

Macromolecule Entities
Molecule Chains Length Organism Details
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 A, B, C 112 Homo sapiens Fragment: 6th PDZ domain: Residues 1149-1233
Mutation: C43S
Gene Name(s): MAGI1 Gene View AIP3 BAIAP1 BAP1 Gene View TNRC19
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HIS
Query on HIS

A, C HISTIDINE
C6 H10 N3 O2
HNDVDQJCIGZPNO-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.188
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.05 α = 90.00
b = 77.76 β = 101.49
c = 50.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-08-31
  • Released Date: 2007-10-16
  • Deposition author(s): Ugochukwu, E., Pilka, E.S., Hozjan, V., Kavanagh, K.L., Cooper, C., Pike, A.C.W., Elkins, J.M., Doyle, D.A., von Delft, F., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor