2R37

Crystal structure of human glutathione peroxidase 3 (selenocysteine to glycine mutant)

Structural Biology Knowledgebase: 2R37 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.151

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2R37

Classification: OXIDOREDUCTASE

Total Structure Weight: 47218.94

Macromolecule Entities
Molecule Chains Length Organism Details
Glutathione peroxidase 3 A, B 207 Homo sapiens EC#: 1.11.1.9 IUBMB
Fragment: Residues 25-223
Mutation: C73G
Gene Name(s): GPX3 Gene View GPXP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.151
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.72 α = 90.00
b = 61.31 β = 90.00
c = 100.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-08-29
  • Released Date: 2007-09-11
  • Deposition author(s): Pilka, E.S., Guo, K., Gileadi, O., Rojkowa, A., von Delft, F., Pike, A.C.W., Kavanagh, K.L., Johannson, C., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4