2QQK

Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 2QQK

Classification: SIGNALING PROTEIN

Total Structure Weight: 114018.45

Macromolecule Entities
Molecule Chains Length Organism Details
Neuropilin-2 A 579 Homo sapiens Fragment: CUB 1, CUB2, F5/8 type C 1, and C2 domains
Gene Name(s): NRP2 Gene View VEGF165R2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Antibody Heavy Chain H 231 Homo sapiens
Antibody Light Chain L 214 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.186
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 148.28 α = 90.00
b = 105.87 β = 98.83
c = 92.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-26
  • Released Date: 2007-11-20
  • Deposition author(s): Appleton, B.A., Wiesmann, C.

Revision History

  • Version 1_0: 2007-11-20

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description