2QMI

Structure of the octameric penicillin-binding protein homologue from Pyrococcus abyssi

Structural Biology Knowledgebase: 2QMI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2QMI

Classification: HYDROLASE

Total Structure Weight: 408623.78

Macromolecule Entities
Molecule Chains Length Organism Details
Pbp related beta-lactamase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 447 Pyrococcus abyssi EC#: 3.5.2.6 IUBMB
Gene Name(s): pbp PAB0087
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DO3
Query on DO3

E, F, G, H 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7- TRIACETIC ACID
C17 H32 N4 O7
IQUHNCOJRJBMSU-CQSZACIVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LU
Query on LU

A, B, C, D, E, F, G, H LUTETIUM (III) ION
LU (Synonym)
Lu
PSDMOPINLDTFSZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.196
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.94 α = 72.17
b = 105.63 β = 66.51
c = 112.92 γ = 81.39

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-16
  • Released Date: 2008-07-22
  • Deposition author(s): Delfosse, V., Girard, E., Moulinier, L., Schultz, P., Mayer, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4