2QJJ

Crystal structure of D-Mannonate dehydratase from Novosphingobium aromaticivorans

Structural Biology Knowledgebase: 2QJJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2QJJ

Classification: LYASE

Total Structure Weight: 181288.81

Macromolecule Entities
Molecule Chains Length Organism Details
Mandelate racemase/muconate lactonizing enzyme A, B, C, D 402 Novosphingobium aromaticivorans EC#: 4.2.1.8 IUBMB
Gene Name(s): manD Saro_3675

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.178
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.46 α = 90.00
b = 167.71 β = 90.00
c = 166.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-07
  • Released Date: 2007-10-30
  • Deposition author(s): Fedorov, A.A., Fedorov, E.V., Rakus, J.F., Vick, J.E., Gerlt, J.A., Almo, S.C.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4