Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 30S subunit of the first 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.     DOI:10.2210/pdb2qbh/pdb   NDB ID: RR0181

2QBH Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly 1 (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 2QBH   2QBI   2QBJ   2QBK   Download All Files          Primary Citation       Molecular Description Hide Classification: Ribosome Structure Weight: 789320.23   Molecule: 16S rRNA Polymer: 1 Type: polyribonucleotide Length: 1542 Chains: A Molecule: 30S ribosomal protein S3 Polymer: 2 Type: polypeptide(L) Length: 232 Chains: C Molecule: 30S ribosomal protein S4 Polymer: 3 Type: polypeptide(L) Length: 205 Chains: D Molecule: 30S ribosomal protein S5 Polymer: 4 Type: polypeptide(L) Length: 166 Chains: E Molecule: 30S ribosomal protein S6 Polymer: 5 Type: polypeptide(L) Length: 135 Chains: F Molecule: 30S ribosomal protein S7 Polymer: 6 Type: polypeptide(L) Length: 178 Chains: G Molecule: 30S ribosomal protein S8 Polymer: 7 Type: polypeptide(L) Length: 129 Chains: H Molecule: 30S ribosomal protein S9 Polymer: 8 Type: polypeptide(L) Length: 129 Chains: I Molecule: 30S ribosomal protein S10 Polymer: 9 Type: polypeptide(L) Length: 103 Chains: J Molecule: 30S ribosomal protein S11 Polymer: 10 Type: polypeptide(L) Length: 128 Chains: K Molecule: 30S ribosomal protein S12 Polymer: 11 Type: polypeptide(L) Length: 123 Chains: L Molecule: 30S ribosomal protein S13 Polymer: 12 Type: polypeptide(L) Length: 117 Chains: M Molecule: 30S ribosomal protein S14 Polymer: 13 Type: polypeptide(L) Length: 100 Chains: N Molecule: 30S ribosomal protein S15 Polymer: 14 Type: polypeptide(L) Length: 89 Chains: O Molecule: 30S ribosomal protein S16 Polymer: 15 Type: polypeptide(L) Length: 82 Chains: P Molecule: 30S ribosomal protein S17 Polymer: 16 Type: polypeptide(L) Length: 83 Chains: Q Molecule: 30S ribosomal protein S18 Polymer: 17 Type: polypeptide(L) Length: 74 Chains: R Molecule: 30S ribosomal protein S19 Polymer: 18 Type: polypeptide(L) Length: 91 Chains: S Molecule: 30S ribosomal protein S20 Polymer: 19 Type: polypeptide(L) Length: 86 Chains: T Molecule: 30S ribosomal protein S2 Polymer: 20 Type: polypeptide(L) Length: 240 Chains: B Molecule: 30S ribosomal protein S21 Polymer: 21 Type: polypeptide(L) Length: 70 Chains: U       Source Hide Polymer: 1 Scientific Name: Escherichia coli   Polymer: 2 Scientific Name: Escherichia coli   Polymer: 3 Scientific Name: Escherichia coli   Polymer: 4 Scientific Name: Escherichia coli   Polymer: 5 Scientific Name: Escherichia coli   Polymer: 6 Scientific Name: Escherichia coli   Polymer: 7 Scientific Name: Escherichia coli   Polymer: 8 Scientific Name: Escherichia coli   Polymer: 9 Scientific Name: Escherichia coli   Polymer: 10 Scientific Name: Escherichia coli   Polymer: 11 Scientific Name: Escherichia coli   Polymer: 12 Scientific Name: Escherichia coli   Polymer: 13 Scientific Name: Escherichia coli   Polymer: 14 Scientific Name: Escherichia coli   Polymer: 15 Scientific Name: Escherichia coli   Polymer: 16 Scientific Name: Escherichia coli   Polymer: 17 Scientific Name: Escherichia coli   Polymer: 18 Scientific Name: Escherichia coli   Polymer: 19 Scientific Name: Escherichia coli   Polymer: 20 Scientific Name: Escherichia coli   Polymer: 21 Scientific Name: Escherichia coli         Related PDB Entries Hide Id Details 2QBI  50s subunit of 70s ribosome one  2QBJ  30s subunit of 70s ribosome two  2QBK  50s subunit of 70s ribosome two        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links LLL     (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO- 3-((2R,3R,6S)-3-AMINO-6- (AMINOMETHYL)-TETRAHYDRO- 2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)- 5-METHYL-4- (METHYLAMINO)-TETRAHYDRO-2H-PYRAN- 3,5-DIOL C19 H39 N5 O7 Ligand Explorer MG     MAGNESIUM ION Mg Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (21 Domains) CATH Classification v3.2.0 - (14 Domains) PFAM Classification - (24 Domains) GO Terms - (197 Terms)     Reset Layout

Biological Assembly 1     More Images... View in Jmol Composite of PDB entries (2QBH and 2QBI)         Deposition Summary Hide Authors:   Borovinskaya, M.A.,   Pai, R.D.,   Zhang, W.,   Schuwirth, B.-S.,   Holton, J.M.,   Hirokawa, G.,   Kaji, H.,   Kaji, A.,   Cate, J.H.D. Deposition:   2007-06-17 Release:   2007-09-25 Last Modified (REVDAT):   2009-11-03       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 4.00 R-Value: 0.261 (work) R-Free: 0.305 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 208.54 α = 90.00  b = 378.89 β = 90.00  c = 736.90 γ = 90.00