Macromolecules
Sequence Display for 2PNL

Classification: hydrolase

Total Structure Weight: 218568.21

Macromolecule Entities
Molecule Chains Length Organism Details
Protease VP4 A, B, C..., D, E, F, G, H, I, JA, B, C, D, E, F, G, H, I, J 203 Infectious pancreatic necrosis virus Fragment: VP4tri (residues 514-716)
Mutation: M603M, M630M, M652M, K674A
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GAI
Query on GAI

A, B, C, D, E, F, H, I, J GUANIDINE
C H5 N3
ZRALSGWEFCBTJO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.190
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.70 α = 93.06
b = 69.26 β = 95.03
c = 191.39 γ = 97.56

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-24
  • Released Date: 2007-06-05
  • Deposition author(s): Paetzel, M., Lee, J., Feldman, A.R., Delmas, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4