2PN3

Crystal Structure of Hepatitis C Virus IRES Subdomain IIa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 2PN3

Classification: RNA

Total Structure Weight: 14257.82

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3' A 24 synthetic
5'-R(*GP*CP*GP*(5BU)P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3' B 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BU
Query on 5BU
B RNA LINKING C9 H12 Br N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.229
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 48.94 α = 90.00
b = 48.94 β = 90.00
c = 120.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-23
  • Released Date: 2008-04-01
  • Deposition author(s): Zhao, Q., Han, Q., Kissinger, C.R., Hermann, T., Thompson, P.A.

Revision History

  • Version 1_0: 2008-04-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance