2P4N

Human Monomeric Kinesin (1BG2) and Bovine Tubulin (1JFF) Docked into the 9-Angstrom Cryo-EM Map of Nucleotide-Free Kinesin Complexed to the Microtubule

Structural Biology Knowledgebase: 2P4N SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.0 Å
  • Reconstruction Method: n/a

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2P4N

Classification: TRANSPORT PROTEIN

Total Structure Weight: 138353.56

Macromolecule Entities
Molecule Chains Length Organism Details
Kinesin heavy chain K 325 Homo sapiens Fragment: K349 Construct of Human Kinesin
Gene Name(s): KIF5B Gene View KNS KNS1
Tubulin alpha chain A 451 Bos taurus Gene Name(s): TUBA1A Gene View
Tubulin beta chain B 445 Bos taurus Gene Name(s): TUBB2B Gene View

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TA1
Query on TA1

B TAXOL
C47 H51 N O14
RCINICONZNJXQF-MZXODVADSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GTP
Query on GTP

B GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GDP
Query on GDP

B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

K ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, K MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.0 Å
  • Reconstruction Method: n/a

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-12
  • Released Date: 2008-07-08
  • Deposition author(s): Sindelar, C.V., Downing, K.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4