2P0D

ArhGAP9 PH domain in complex with Ins(1,4,5)P3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 2P0D

Classification: LIGAND BINDING PROTEIN

Total Structure Weight: 14845.50

Macromolecule Entities
Molecule Chains Length Organism Details
Rho GTPase-activating protein 9 A 129 Homo sapiens Fragment: Pleckstrin homology domain
Gene Name(s): ARHGAP9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I3P
Query on I3P

A D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
C6 H15 O15 P3
MMWCIQZXVOZEGG-XJTPDSDZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
I3P N/A in BindingDB
N/A in BindingMoad
Kd: 100 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.199
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 41.51 α = 90.00
b = 95.11 β = 90.00
c = 29.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-28
  • Released Date: 2007-03-27
  • Deposition author(s): Ceccarelli, D.F.J., Blasutig, I., Goudreault, M., Ruston, J., Pawson, T., Sicheri, F.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance