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Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys9
2OQ6
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 90975.83
    Molecule: JmjC domain-containing histone demethylation protein 3A
    Polymer: 1 Type: protein Length: 381
    Chains: A, B
    EC#: 1.14.11   
    Organism Homo sapiens
    Gene Names KDM4A JHDM3A JMJD2 JMJD2A KIAA0677
    UniProtKB:   Protein Feature View | Search PDB | O75164  
    Molecule: synthetic peptide
    Polymer: 2 Type: protein Length: 8
    Chains: C, D
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2OQ7  Crystal structure of JMJD2A complexed with Ni and N-oxalylglycine 
    2OS2  Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys36 
    2OT7  Crystal structure of JMJD2A complexed with histone H3 peptide monomethylated at Lys9 
    2OX0  Crystal structure of JMJD2A complexed with histone H3 peptide dimethylated at Lys9 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    NI
    Search 
    Download      		NI Ni
    NICKEL (II) ION
    OGA
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    Download      		OGA C4 H5 N O5
    N-OXALYLGLYCINE
    		OGA:2OQ6
    ZN
    Search 
    Download      		ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    OGA
    Search 
    Download      		OGA
    IC50: 250000 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    M3L
    Search      		M3L C9 H21 N2 O2 LYS lPeptideLinking
    ALY
    Search      		ALY C8 H16 N2 O3 LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors
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