2OG1

Crystal Structure of BphD, a C-C hydrolase from Burkholderia xenovorans LB400


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 2OG1

Classification: HYDROLASE

Total Structure Weight: 64751.85

Macromolecule Entities
Molecule Chains Length Organism Details
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase A, B 286 Paraburkholderia xenovorans EC#: 3.7.1.8 IUBMB
Gene Name(s): bphD Bxeno_C1120 Bxe_C1186
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EOH
Query on EOH

A, B ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.208
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 135.00 α = 90.00
b = 135.00 β = 90.00
c = 66.72 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-04
  • Released Date: 2007-01-16
  • Deposition author(s): Dai, S., Ke, J., Bolin, J.T.

Revision History

  • Version 1_0: 2007-01-16

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Source and taxonomy, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description