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Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa
2ODJ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Membrane Protein
    Structure Weight: 97340.33
    Molecule: Porin D
    Polymer: 1 Type: protein Length: 428
    Chains: A, B
    EC#: 3.4.21   
    Organism Pseudomonas aeruginosa PAO1
    Gene Names oprD PA0958
    UniProtKB:   Protein Feature View | Search PDB | P32722  
    Membrane Protein:   Source: mpstruc
    BETA-BARREL
    Outer Membrane Carboxylate Channels (Occ)
    OccD1 (OprD) basic amino acid uptake channel
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Pseudomonas aeruginosa   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    C8E
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    C8E C16 H34 O5
    (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Biswas, S.,  van den Berg, B.

    Deposition:   2006-12-22
    Release:   2007-10-16
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
    2011-07-13
    Source and taxonomy
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.90
    R-Value: 0.248 (obs.)
    R-Free: 0.315
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 111.37 α = 90.00 
    b = 97.53 β = 119.63 
    c = 95.79 γ = 90.00