2NWR

Crystal structure of C11N mutant of KDO8P Synthase in complex with PEP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 2NWR

Classification: TRANSFERASE

Total Structure Weight: 60096.76

Macromolecule Entities
Molecule Chains Length Organism Details
2-dehydro-3-deoxyphosphooctonate aldolase A, B 267 Aquifex aeolicus EC#: 2.5.1.55 IUBMB
Mutation: C1011N
Gene Name(s): kdsA aq_085
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEP
Query on PEP

A, B PHOSPHOENOLPYRUVATE
C3 H5 O6 P
DTBNBXWJWCWCIK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.227
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 84.41 α = 90.00
b = 84.41 β = 90.00
c = 159.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-16
  • Released Date: 2007-04-24
  • Deposition author(s): Kona, F., Xu, X., Martin, P., Kuzmic, P., Gatti, D.L.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance