2NTC

Crystal Structure of sv40 large T antigen origin binding domain with DNA

Structural Biology Knowledgebase: 2NTC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NTC

Classification: DNA binding protein / DNA

Total Structure Weight: 43717.96


Macromolecule Entities
Molecule Chains Length Organism Details
large T antigen A, B 134 Simian virus 40 Fragment: Origin binding domain (residues 131-259)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
21-nt PEN element of the SV40 DNA origin W 21 synthetic
21-nt PEN element of the SV40 DNA origin C 21 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.205
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.49 α = 90.00
b = 68.34 β = 90.00
c = 97.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-07
  • Released Date: 2007-02-13
  • Deposition author(s): Bohm, A., Meinke, G., Bullock, P.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor