Crystal Structure of sv40 large T antigen origin binding domain with DNA
DOI:10.2210/pdb2ntc/pdb   NDB ID: PD0908
Primary Citation
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 43718.03
    Molecule: 21-nt PEN element of the SV40 DNA origin
    Polymer: 1 Type: dna Length: 21
    Chains: W
    Molecule: 21-nt PEN element of the SV40 DNA origin
    Polymer: 2 Type: dna Length: 21
    Chains: C
    Molecule: large T antigen
    Polymer: 3 Type: protein Length: 134
    Chains: A, B
    Fragment: Origin binding domain (residues 131-259)
    Organism: Simian virus 40
    UniProtKB: Search PDB | Q98ZP7   Protein Feature View
  •   Structure Validation Hide

    View the full validation report  


  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Simian virus 40   Taxonomy   Expression System: Escherichia coli bl21(de3)  
  •   Related PDB Entries Hide
    Identifier Details
    1TBD   NMR of same protein 
    2FUF   high resolution open-ring form of same protein 
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0908
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
  •   MyPDB Personal Annotations Hide
  •   Deposition Summary Hide
    Authors:   Bohm, A.,  Meinke, G.,  Bullock, P.A.

    Deposition:   2006-11-07
    Release:   2007-02-13
    Last Modified (REVDAT):   2011-07-13
  •   Revision History    Hide
    Mouse over text for details
    Flag residual B-value
    Version format compliance
  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.40
    R-Value: 0.209 (obs.)
    R-Free: 0.287
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 64.49 α = 90.00 
    b = 68.34 β = 90.00 
    c = 97.26 γ = 90.00