2L65

HADDOCK calculated model of the complex of the resistance protein CalC and Calicheamicin-Gamma


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 4
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 2L65

Classification: Structural genomics Unknown function

Total Structure Weight: 19341.50

Macromolecule Entities
Molecule Chains Length Organism Details
CalC A 155 Micromonospora echinospora Fragment: sequence database residues 27-181
Gene Name(s): calC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTC
Query on MTC

A [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO- ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE- 2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER
C18 H17 N O4 S3
PNQXYYVQKWQRKL-LUWMVQLVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HIB
Query on HIB

A 4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID
C10 H11 I O5
JFNYBTUZUIKXSC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRP
Query on MRP

A 3-O-METHYL-ALPHA-L-RHAMNOPYRANOSIDE
C7 H14 O5
OEKPKBBXXDGXNB-PAMBMQIZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EMP
Query on EMP

A 2,4-DIDEOXY-4-(ETHYLAMINO)-3-O-METHYL ALPHA- L-THREO-PENTOPYRANOSIDE
C8 H17 N O3
OSWHMLHEYCWQRU-BIIVOSGPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DSR
Query on DSR

A 2,6-DIDEOXY-4-THIO-BETA-D-ALLOSEPYRANOSIDE
C6 H12 O3 S
PYIPBDQDMFBTIQ-JGWLITMVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DAG
Query on DAG

A 4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE
C6 H13 N O4
RJKBJEZZABBYBA-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 4
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-15
  • Released Date: 2011-03-02
  • Deposition author(s): Singh, S., Markley, J.L., Thorson, J.S., Center for Eukaryotic Structural Genomics (CESG)
  • Previous versions: 2GKC

Revision History

  • 2011-07-13
    Type: Version format compliance