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NMR solution structure of the d3'-stem closed by a GAAA tetraloop of the group II intron Sc.ai5(gamma)
DOI:10.2210/pdb2k66/pdb   NDB ID: 2K66
2K66
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 7082.33
    Molecule: 5'-R(*GP*GP*AP*GP*UP*AP*UP*GP*UP*GP*AP*AP*AP*GP*CP*AP*UP*AP*CP*UP*CP*C)-3'
    Polymer: 1 Type: rna Length: 22
    Chains: A
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1KXK  Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron 
    1R2P  Solution structure of domain 5 from the ai5(gamma) group II intron 
    2AHT  Solution structure of domain 6 from the ai5(gamma)group II intron 
    2K63  NMR solution structure of the d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5(gamma) 
    2K64  NMR solution structure of the d3'-hairpin including EBS1 together with IBS1 of the group II intron Sc.ai5(gamma) 
    2K65  NMR solution structure of the exon/intron binding site 1 (EBS1/IBS1) of the group II intron Sc.ai5(gamma) 
    3BWP  Crystal structure of a self-spliced group II intron 
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 2K66
     
 
Data in orange boxes are gathered from external resources (when available).
 
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  •   Deposition Summary Hide
    Authors:   Kruschel, D.,  Sigel, R.K.O.

    Deposition:   2008-07-04
    Release:   2009-07-14
    Last Modified (REVDAT):   2014-03-12
     
  •   Revision History    Hide
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    2014-03-12
    Citation
    2014-02-26
    Citation
    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
      NMR Restraints
    NMR Restraint Grid  
    BMRB  
    NMR Ensemble
    Conformers Calculated:     200
    Conformers Submitted:     20
    Selection Criteria: structures with the lowest energy
    NMR Refine
    Method: SOLUTION NMR