2JG4

SUBSTRATE-FREE IDE STRUCTURE IN ITS CLOSED CONFORMATION

Structural Biology Knowledgebase: 2JG4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JG4

Classification: HYDROLASE

Total Structure Weight: 229885.22

Macromolecule Entities
Molecule Chains Length Organism Details
INSULIN DEGRADING ENZYME A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Fragment: RESIDUES 42-1018
Mutation: M78I, V555A, K567F, K568F, K569L, Y831F
Gene Name(s): IDE Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.182
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 263.21 α = 90.00
b = 263.21 β = 90.00
c = 90.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-07
  • Released Date: 2007-07-03
  • Deposition author(s): Malito, E., Tang, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4