2JF6

Structure of inactive mutant of Strictosidine Glucosidase in complex with strictosidine

Structural Biology Knowledgebase: 2JF6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.222

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JF6

Classification: HYDROLASE

Total Structure Weight: 122985.32

Macromolecule Entities
Molecule Chains Length Organism Details
STRICTOSIDINE-O-BETA-D-GLUCOSIDASE A, B 532 Rauvolfia serpentina EC#: 3.2.1.105 IUBMB
Gene Name(s): SGR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
S55
Query on S55

A, B METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-D-GLUCOPYRANOSYLOXY)- 4-[(1S)-2,3,4,9-TETRAHYDRO-1H-BETA-CARBOLIN- 1-YLMETHYL]-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE
C27 H36 N2 O9
HZZMXWZOTXPILK-NTXHKPOFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.222
  • Space Group: P 4 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 159.00 α = 90.00
b = 159.00 β = 90.00
c = 102.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-26
  • Released Date: 2008-02-05
  • Deposition author(s): Barleben, L., Panjikar, S., Ruppert, M., Koepke, J., Stockigt, J.

Revision History

  • 2012-05-16
    Type: Other | Details: Biological assembly, Source and taxonomy
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group