2JC6

Crystal structure of human calmodulin-dependent protein kinase 1D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 2JC6

Classification: TRANSFERASE

Total Structure Weight: 76382.94

Macromolecule Entities
Molecule Chains Length Organism Details
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE 1D A, C 334 Homo sapiens EC#: 2.7.11.17 IUBMB
Fragment: RESIDUES 1-333
Gene Name(s): CAMK1D Gene View CAMKID
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
QPP
Query on QPP

A, C N-(5-METHYL-1H-PYRAZOL-3-YL)-2-PHENYLQUINAZOLIN- 4-AMINE
5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE (Synonym)
C18 H15 N5
JYCUVOXSZBECAY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 39.64 α = 90.00
b = 93.06 β = 96.16
c = 101.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-19
  • Released Date: 2007-02-13
  • Deposition author(s): Debreczeni, J.E., Rellos, P., Fedorov, O., Niesen, F.H., Bhatia, C., Shrestha, L., Salah, E., Smee, C., Colebrook, S., Berridge, G., Gileadi, O., Bunkoczi, G., Ugochukwu, E., Pike, A.C.W., von Delft, F., Knapp, S., Sundstrom, M., Weigelt, J., Arrowsmith, C.H., Edwards, A.

Revision History

  • Version 1_0: 2007-02-13

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Refinement description, Version format compliance