2JBU

CRYSTAL STRUCTURE OF HUMAN INSULIN DEGRADING ENZYME COMPLEXED WITH CO-PURIFIED PEPTIDES.

Structural Biology Knowledgebase: 2JBU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 2JBU

Classification: HYDROLASE

Total Structure Weight: 231350.19

Macromolecule Entities
Molecule Chains Length Organism Details
INSULIN-DEGRADING ENZYME A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Fragment: RESIDUES 42-1019
Mutation: E111Q
Gene Name(s): IDE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CO-PURIFIED PEPTIDE C, D 12 Escherichia coli

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.186
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 263.28 α = 90.00
b = 263.28 β = 90.00
c = 90.74 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-11
  • Released Date: 2007-07-03
  • Deposition author(s): Im, H., Shen, Y., Tang, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4