CRYSTAL STRUCTURE OF AN AUTOIMMUNE COMPLEX BETWEEN A HUMAN IGM RHEUMATOID FACTOR AND IGG1 FC REVEALS A NOVEL FC EPITOPE AND EVIDENCE FOR AFFINITY MATURATION DOI:10.2210/pdb2j6e/pdb

2J6E   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Immune System Structure Weight: 156037.79 Molecule: IG GAMMA-1 CHAIN C REGION Polymer: 1 Type: protein Length: 232 Chains: A, B Fragment: FC DOMAIN, RESIDUES 99-330 Organism Homo sapiens Gene Name IGHG1 UniProtKB:   Protein Feature View | Search PDB | P01857     Molecule: IGM Polymer: 2 Type: protein Length: 231 Chains: H, I Organism Homo sapiens Molecule: IGM Polymer: 3 Type: protein Length: 234 Chains: L, M Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens   Polymer: 9 Scientific Name: Synthetic construct   Taxonomy     Polymer: 10 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1AJ7  IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY  1AQK  THREE-DIMENSIONAL STRUCTURE OF A HUMAN FAB WITH HIGH AFFINITY FOR TETANUS TOXOID  1D5B  UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY  1D5I  UNLIGANDED GERMLINE PRECURSOR OF AN OXY-COPE CATALYTIC ANTIBODY  1D6V  CONFORMATION EFFECTS IN BIOLOGICAL CATALYSIS INTRODUCED BY OXY-COPE ANTIBODY MATURATION  1DN2  FC FRAGMENT OF HUMAN IGG1 IN COMPLEX WITH AN ENGINEERED 13 RESIDUE PEPTIDE DCAWHLGELVWCT-NH2  1E4K  CRYSTAL STRUCTURE OF SOLUBLE HUMAN IGG1 FC FRAGMENT-FC-GAMMA RECEPTOR III COMPLEX  1FC1  FC FRAGMENT (IGG1 CLASS)  1FC2    1FCC    1H3T  STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY  1H3U  STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY  1H3V  STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY  1H3W  STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY  1H3Y  CRYSTAL STRUCTURE OF A HUMAN IGG1 FC- FRAGMENT,HIGH SALTCONDITION  1HZH  CRYSTAL STRUCTURE OF THE INTACT HUMAN IGG B12 WITH BROADAND POTENT ACTIVITY AGAINST PRIMARY HIV-1 ISOLATES: ATEMPLATE FOR HIV VACCINE DESIGN  1I7Z  ANTIBODY GNC92H2 BOUND TO LIGAND  1IIS  CRYSTAL STRUCTURE OF A HUMAN FCG RECEPTOR IN COMPLEX WITHAN FC FRAGMENT OF IGG1 ( ORTHORHOMBIC)  1IIX  CRYSTAL STRUCTURE OF A HUMAN FCG RECEPTOR IN COMPLEX WITHAN FC FRAGMENT OF IGG1 ( HEXAGONAL)  1L6X  FC FRAGMENT OF RITUXIMAB BOUND TO A MINIMIZED VERSION OFTHE B-DOMAIN FROM PROTEIN A CALLED Z34C  1N7M  GERMLINE 7G12 WITH N-METHYLMESOPORPHYRIN  1OQX  G-2 GLYCOVARIANT OF HUMAN IGG FC BOUND TO MINIMIZED VERSIONOF PROTEIN A CALLED Z34C  1T83  CRYSTAL STRUCTURE OF A HUMAN TYPE III FC GAMMA RECEPTOR INCOMPLEX WITH AN FC FRAGMENT OF IGG1 (ORTHORHOMBIC)  2IWG  T.B.C  2RCS  IMMUNOGLOBULIN 48G7 GERMLINE FAB - AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY      Ligand Chemical Component Hide Identifier Formula Name Interactions ACT Search  Download  C2 H3 O2 ACETATE ION   Ligand Explorer BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer CAC Search  Download  C2 H6 As O2 CACODYLATE ION   Ligand Explorer CD Search  Download  Cd CADMIUM ION   Ligand Explorer FUL Search  Download  C6 H12 O5 BETA-L-FUCOSE   Ligand Explorer GAL Search  Download  C6 H12 O6 BETA-D-GALACTOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer MPD Search  Download  C6 H14 O2 (4S)-2-METHYL-2,4-PENTANEDIOL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NDG Search  Download  C8 H15 N O6 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 12 Domains - data from SCOP   CATH Classification v3.4.0: 12 Domains - data from CATH   Pfam Classification: 15 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Duquerroy, S.,  Stura, E.A.,  Bressanelli, S.,  Browne, H.,  Beale, D.,  Hamon, M.,  Casali, P.,  Vaney, M.-C.,  Rey, F.A.,  Sutton, B.J.,  Taussig, M.J. Deposition:   2006-09-28 Release:   2007-04-10 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.00 R-Value: 0.223 (obs.) R-Free: 0.288 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 241.98 α = 90.00  b = 75.61 β = 91.13  c = 102.40 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin