2IPU

PFA1 Fab fragment complexed with Abeta 1-8 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 2IPU

Classification: IMMUNE SYSTEM

Total Structure Weight: 99169.57

Macromolecule Entities
Molecule Chains Length Organism Details
IgG2a Fab fragment Heavy Chain K, L 219 Mus musculus Gene Name(s): Igkc Igk-C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IgG2a Fab fragment Light Chain Kappa G, H 226 Mus musculus
abeta 1-8 peptide P, Q 8 Homo sapiens Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

K, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACM
Query on ACM

H, K, L ACETAMIDE
C2 H5 N O
DLFVBJFMPXGRIB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.182
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 43.07 α = 72.32
b = 70.33 β = 86.08
c = 74.20 γ = 86.02

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-12
  • Released Date: 2007-10-09
  • Deposition author(s): Gardberg, A.S., Dealwis, C.

Revision History

  • Version 1_0: 2007-10-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance