2IKF

Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 2IKF

Classification: TRANSFERASE

Total Structure Weight: 80267.23

Macromolecule Entities
Molecule Chains Length Organism Details
RNA uridylyl transferase A, B 353 Trypanosoma brucei EC#: 2.7.7.52 IUBMB
Gene Name(s): Tb11.01.7300
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UTP
Query on UTP

A URIDINE 5'-TRIPHOSPHATE
C9 H15 N2 O15 P3
PGAVKCOVUIYSFO-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.228
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 78.77 α = 90.00
b = 41.53 β = 94.94
c = 103.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-02
  • Released Date: 2007-02-20
  • Deposition author(s): Luecke, H., Stagno, J.

Revision History

  • Version 1_0: 2007-02-20

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description