Crystal structure of Src kinase domain in complex with covalent inhibitor PD168393
2HWP
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 66224.24
    Molecule: Proto-oncogene tyrosine-protein kinase Src
    Polymer: 1 Type: protein Length: 286
    Chains: A, B
    EC#: 2.7.10.2   
    Organism: Gallus gallus
    Gene Name: Gene View for SRC
    UniProtKB: Protein Feature View | Search PDB | P00523  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Gallus gallus   Taxonomy   Common Name: Chicken Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2HWO    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DJK
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    DJK C17 H13 Br N4 O
    N-[4-(3-BROMO-PHENYLAMINO)-QUINAZOLIN-6-YL]- ACRYLAMIDE
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    DJK
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    DJK
    IC50: 340 - >27000 nM (98 - 100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Rauh, D.,  Blair, J.A.,  Shokat, K.M.

    Deposition:   2006-08-01
    Release:   2007-02-27
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.48
    R-Value: 0.228 (obs.)
    R-Free: 0.276
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 42.06 α = 100.74 
    b = 63.01 β = 89.81 
    c = 73.69 γ = 90.20