2HBT

Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor

Structural Biology Knowledgebase: 2HBT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2HBT

Classification: Oxidoreductase

Total Structure Weight: 28169.37

Macromolecule Entities
Molecule Chains Length Organism Details
Egl nine homolog 1 A 247 Homo sapiens EC#: 1.14.11.29 IUBMB
Fragment: catalytic domain
Gene Name(s): EGLN1 Gene View C1orf12 PNAS-118 PNAS-137

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UN9
Query on UN9

A N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE
C12 H9 Cl N2 O4
OUQVKRKGTAUJQA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UN9 IC50: 70 - 3900 nM (100) BindingDB
Kd: 80 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.213
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.17 α = 90.00
b = 111.17 β = 90.00
c = 40.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-06-14
  • Released Date: 2006-06-27
  • Deposition author(s): Evdokimov, A.G., Walter, R.L., Mekel, M., Pokross, M.E., Kawamoto, R., Boyer, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4