2H4H

Sir2 H116Y mutant-p53 peptide-NAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 2H4H

Classification: HYDROLASE

Total Structure Weight: 30463.18

Macromolecule Entities
Molecule Chains Length Organism Details
NAD-dependent deacetylase A 246 Thermotoga maritima EC#: 3.5.1 IUBMB
Mutation: H116Y
Gene Name(s): cobB sir2 TM_0490
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cellular tumor antigen p53 B 18 Homo sapiens Mutation: K11X
Gene Name(s): TP53 Gene View P53
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ALY
Query on ALY
B L-PEPTIDE LINKING C8 H16 N2 O3 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.196
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.26 α = 90.00
b = 58.68 β = 90.00
c = 106.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-24
  • Released Date: 2006-09-05
  • Deposition author(s): Hoff, K.G., Avalos, J.L., Sens, K., Wolberger, C.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance