2H39

Crystal Structure of an ADP-Glucose Phosphorylase from Arabidopsis thaliana with bound ADP-Glucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.23 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 2H39

Classification: TRANSFERASE

Total Structure Weight: 79455.35

Macromolecule Entities
Molecule Chains Length Organism Details
Probable galactose-1-phosphate uridyl transferase A, B 351 Arabidopsis thaliana Mutation: H186G
Gene Name(s): At5g18200 MRG7.16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADQ
Query on ADQ

A, B ADENOSINE-5'-DIPHOSPHATE-GLUCOSE
ADENOSINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL- MONOPHOSPHATE ESTER (Synonym)
C16 H25 N5 O15 P2
WFPZSXYXPSUOPY-ROYWQJLOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.23 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 61.32 α = 90.00
b = 95.45 β = 90.00
c = 110.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-22
  • Released Date: 2006-06-13
  • Deposition author(s): McCoy, J.G., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)
  • This entry supercedes: 2GDK

Revision History

  • Version 1_0: 2006-06-13

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance