2GZ7

Structure-Based Drug Design and Structural Biology Study of Novel Nonpeptide Inhibitors of SARS-CoV Main Protease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 2GZ7

Classification: HYDROLASE

Total Structure Weight: 34335.82

Macromolecule Entities
Molecule Chains Length Organism Details
Replicase polyprotein 1ab A 306 Sars-related coronavirus EC#: 3.4.22 IUBMB
Fragment: 3C-like proteinase
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D3F
Query on D3F

A 2-[(2,4-DICHLORO-5-METHYLPHENYL)SULFONYL]- 1,3-DINITRO-5-(TRIFLUOROMETHYL)BENZENE
2-[(2,4-DICHLORO-5-METHYLPHENYL)SULFONYL]- 1,3-DINITRO-5-(TRIFLUOROMETHYL) BENZENE (Synonym)
C14 H7 Cl2 F3 N2 O6 S
INAZPZCJNPPHGV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
D3F IC50: 300 nM (100) BindingDB

IC50: 300 nM  BindingMOAD
IC50: 300 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.204
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 107.78 α = 90.00
b = 82.78 β = 104.93
c = 53.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-11
  • Released Date: 2006-08-29
  • Deposition author(s): Lu, I.L., Wu, S.Y.

Revision History

  • Version 1_0: 2006-08-29

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance