2GS3

Crystal structure of the selenocysteine to glycine mutant of human glutathione peroxidase 4(GPX4)

Structural Biology Knowledgebase: 2GS3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GS3

Classification: OXIDOREDUCTASE

Total Structure Weight: 21219.89

Macromolecule Entities
Molecule Chains Length Organism Details
Phospholipid hydroperoxide glutathione peroxidase A 185 Homo sapiens EC#: 1.11.1.12 IUBMB
Mutation: C73G
Gene Name(s): GPX4 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.172
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.94 α = 90.00
b = 62.94 β = 90.00
c = 195.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-25
  • Released Date: 2006-05-09
  • Deposition author(s): Johansson, C., Kavanagh, K.L., Rojkova, A., Gileadi, O., Von Delft, F., Arrowsmith, C., Weigelt, J., Sundstrom, M., Edwards, A., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4