2GL2

Crystal structure of the tetra mutant (T66G,R67G,F68G,Y69G) of bacterial adhesin FadA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.250 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Crystallization and preliminary X-ray data of the FadA adhesin from Fusobacterium nucleatum.

Nithianantham, S.Xu, M.Wu, N.Han, Y.W.Shoham, M.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1215-1217

  • DOI: https://doi.org/10.1107/S1744309106045593
  • Primary Citation of Related Structures:  
    2GL2

  • PubMed Abstract: 

    Fusobacterium nucleatum is a gram-negative anaerobe prevalent in the oral cavity that is associated with periodontal disease, preterm birth and infections in other parts of the human body. The bacteria attach to and invade epithelial and endothelial cells in the gum tissue and elsewhere via a 13.7 kDa adhesin protein FadA (Fusobacterium adhesin A). FadA exists in two forms: the intact form (pre-FadA), consisting of 129 amino acids, and the mature form (mFadA), which lacks an 18-residue signal sequence. Both forms have been expressed in Escherichia coli and purified. mFadA has been crystallized. The crystals belong to the hexagonal space group P6(1) or P6(5), with unit-cell parameters a = b = 59.3, c = 125.7 A and one molecule per asymmetric unit. The crystals exhibit an unusually high solvent content of 74%. Synchrotron X-ray data have been collected to 1.9 A. The crystals are suitable for X-ray structure determination. The crystal structure of FadA may provide a basis for the development of therapeutic agents to combat periodontal disease and other infections associated with F. nucleatum.


  • Organizational Affiliation

    Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, OH 44106-4935, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
adhesion A
A, B
119Fusobacterium nucleatumMutation(s): 4 
UniProt
Find proteins for Q5I6B0 (Fusobacterium nucleatum)
Explore Q5I6B0 
Go to UniProtKB:  Q5I6B0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5I6B0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.250 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 59.168α = 90
b = 59.168β = 90
c = 188.249γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-04-10
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-18
    Changes: Refinement description
  • Version 1.4: 2021-10-20
    Changes: Database references
  • Version 1.5: 2023-08-30
    Changes: Data collection, Refinement description
  • Version 1.6: 2023-11-15
    Changes: Structure summary