2GDV
Sucrose phosphorylase from BIFIDOBACTERIUM ADOLESCENTIS reacted with sucrose
- PDB DOI: https://doi.org/10.2210/pdb2GDV/pdb
- Classification: TRANSFERASE
- Organism(s): Bifidobacterium adolescentis
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2006-03-17 Released: 2006-09-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.237 
- R-Value Work: 0.198 
- R-Value Observed: 0.200 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
sucrose phosphorylase | 504 | Bifidobacterium adolescentis | Mutation(s): 0  EC: 2.4.1.7 | ||
UniProt | |||||
Find proteins for A0ZZH6 (Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)) Explore A0ZZH6  Go to UniProtKB:  A0ZZH6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0ZZH6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BGC Query on BGC | C [auth A], D [auth B] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.237 
- R-Value Work: 0.198 
- R-Value Observed: 0.200 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 75.74 | α = 90 |
b = 103.07 | β = 90 |
c = 150.69 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
PDB_EXTRACT | data extraction |
SCALEPACK | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2006-09-26  Deposition Author(s): Skov, L.K., Mirza, O., Gajhede, M., Katsrup, J.S.
Revision History (Full details and data files)
- Version 1.0: 2006-09-26
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary