2G4B

Structure of U2AF65 variant with polyuridine tract

Structural Biology Knowledgebase: 2G4B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.261

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2G4B

Classification: RNA Binding Protein / RNA

Total Structure Weight: 21108.06


Macromolecule Entities
Molecule Chains Length Organism Details
Splicing factor U2AF 65 kDa subunit A 172 Homo sapiens Fragment: RNA binding domain
Gene Name(s): U2AF2 Gene View U2AF65
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' B 7 synthetic polypyrimidine tract

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.261
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 129.39 α = 90.00
b = 129.39 β = 90.00
c = 62.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-21
  • Released Date: 2006-07-25
  • Deposition author(s): Sickmier, E.A., Kielkopf, C.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4