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Structure-based drug design of a novel family of PPAR partial agonists: virtual screening, x-ray crystallography and in vitro/in vivo biological activities
2G0G
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription Activator
    Structure Weight: 62412.05
    Molecule: Peroxisome proliferator-activated receptor gamma
    Polymer: 1 Type: protein Length: 271
    Chains: A, B
    Fragment: Ligand binding domain(residues 207-477)
    Organism Homo sapiens
    Gene Names PPARG NR1C3
    UniProtKB:   Protein Feature View | Search PDB | P37231  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    2G0H  the same protein complexed with different ligand 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SP0
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    SP0 C19 H13 F2 N3 O2 S2
    3-FLUORO-N-[1-(4-FLUOROPHENYL)-3-(2-THIENYL)- 1H-PYRAZOL-5-YL]BENZENESULFONAMIDE
    SP0:2G0G
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    SP0
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    SP0
    IC50: 512 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    IC50: 512 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lu, I.L.,  Peng, Y.H.,  Huang, C.F.,  Lin, Y.T.,  Hsu, J.T.A.,  Wu, S.Y.

    Deposition:   2006-02-13
    Release:   2006-05-16
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.54
    R-Value: 0.216 (obs.)
    R-Free: 0.264
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 56.42 α = 90.00 
    b = 88.81 β = 89.99 
    c = 58.26 γ = 90.00