2FIF

Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 2FIF

Classification: PROTEIN TURNOVER / ENDOCYTOSIS

Total Structure Weight: 50394.71

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin A, C, E 76 Bos taurus Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rab5 GDP/GTP exchange factor B, D, F 70 Bos taurus Fragment: A20 zinc finger and inverted ubiquitin interacting motif domains
Gene Name(s): RABGEF1 Gene View RABEX5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B, D, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.228
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 192.20 α = 90.00
b = 44.42 β = 108.98
c = 69.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-29
  • Released Date: 2006-02-07
  • Deposition author(s): Lee, S., Hurley, J.H.

Revision History

  • Version 1_0: 2006-02-07

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Version format compliance