2FDC

Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 2FDC

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 163720.33


Macromolecule Entities
Molecule Chains Length Organism Details
UvrABC system protein B A, B 658 [bacillus] caldotenax Mutation: K233E
Gene Name(s): uvrB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3' C, D 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLQ
Query on FLQ

C N-[6-(ACETYLAMINO)HEXYL]-3',6'-DIHYDROXY- 3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]- 6-CARBOXAMIDE
FLUORESCEIN ADDUCT (Synonym)
C29 H28 N2 O7
NYDPRVGMTFCAQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.205
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 153.26 α = 90.00
b = 153.26 β = 90.00
c = 160.17 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-13
  • Released Date: 2006-03-14
  • Deposition author(s): Truglio, J.J., Kisker, C.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance