2FCW

Structure of a Complex Between the Pair of the LDL Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (RAP).


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 2FCW

Classification: LIPID TRANSPORT / ENDOCYTOSIS / CHAPERONE

Total Structure Weight: 22363.92

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha-2-macroglobulin receptor-associated protein A 109 Homo sapiens Fragment: Domain Three
Mutation: E215G
Gene Name(s): LRPAP1 Gene View A2MRAP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Low-density lipoprotein receptor B 80 Homo sapiens Fragment: A Pair of Ligand-Binding Modules 3 and 4
Gene Name(s): LDLR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.152
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 118.52 α = 90.00
b = 30.02 β = 96.57
c = 58.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-12
  • Released Date: 2006-05-16
  • Deposition author(s): Beglova, N., Fisher, C., Blacklow, S.C.

Revision History

  • Version 1_0: 2006-05-16

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance