2FA1
Crystal structure of PhnF C-terminal domain
- PDB DOI: https://doi.org/10.2210/pdb2FA1/pdb
- Classification: TRANSCRIPTION
- Organism(s): Escherichia coli
- Expression System: Escherichia coli BL21
- Mutation(s): No 
- Deposited: 2005-12-06 Released: 2006-01-10 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.241 
- R-Value Work: 0.187 
- R-Value Observed: 0.190 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Probable transcriptional regulator phnF | 160 | Escherichia coli | Mutation(s): 0  Gene Names: phnF | ||
UniProt | |||||
Find proteins for P16684 (Escherichia coli (strain K12)) Explore P16684  Go to UniProtKB:  P16684 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16684 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BDF Query on BDF | C [auth B] | beta-D-fructopyranose C6 H12 O6 LKDRXBCSQODPBY-ARQDHWQXSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.241 
- R-Value Work: 0.187 
- R-Value Observed: 0.190 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 46.765 | α = 90 |
b = 51.572 | β = 103.64 |
c = 63.961 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
SOLVE | phasing |
Entry History 
Deposition Data
- Released Date: 2006-01-10  Deposition Author(s): Lunin, V.V., Nocek, B.P., Gorelik, M., Skarina, T., Edwards, A.M., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-01-10
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2011-10-05
Changes: Structure summary - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-14
Changes: Data collection, Database references, Structure summary