2F8E

Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with uridylylated VPg protein

Structural Biology Knowledgebase: 2F8E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F8E

Classification: transferase

Total Structure Weight: 56166.46

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-dependent RNA polymerase X 474 Foot-and-mouth disease virus EC#: 2.7.7.48 IUBMB
VPg protein A 23 Foot-and-mouth disease virus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

X MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
U5P
Query on U5P

A URIDINE-5'-MONOPHOSPHATE
C9 H13 N2 O9 P
DJJCXFVJDGTHFX-XVFCMESISA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.234
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 94.38 α = 90.00
b = 94.38 β = 90.00
c = 99.73 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-02
  • Released Date: 2006-03-28
  • Deposition author(s): Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4