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30S ribosome + designer antibiotic
DOI:10.2210/pdb2f4v/pdb   NDB ID: RR0134
2F4V
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 781871.84
    Molecule: 16S ribosomal RNA
    Polymer: 1 Type: rna Length: 1511
    Chains: A
    Organism Thermus thermophilus
    Molecule: 5'-R(P*UP*UP*CP*U)-3'
    Polymer: 2 Type: rna Length: 4
    Chains: Z
    Organism Thermus thermophilus
    Molecule: 30S ribosomal protein S2
    Polymer: 3 Type: protein Length: 256
    Chains: B
    Organism Thermus thermophilus
    Gene Names rpsB rps2 TTHA0861
    UniProtKB:   Protein Feature View | Search PDB | P80371  
    Molecule: 30S ribosomal protein S3
    Polymer: 4 Type: protein Length: 239
    Chains: C
    Organism Thermus thermophilus
    Gene Names rpsC rps3 TTHA1686
    UniProtKB:   Protein Feature View | Search PDB | P80372  
    Molecule: 30S ribosomal protein S4
    Polymer: 5 Type: protein Length: 209
    Chains: D
    Organism Thermus thermophilus
    Gene Names rpsD rps4 TTHA1665
    UniProtKB:   Protein Feature View | Search PDB | P80373  
    Molecule: 30S ribosomal protein S5
    Polymer: 6 Type: protein Length: 162
    Chains: E
    Organism Thermus thermophilus
    Gene Names rpsE TTHA1675
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ5  
    Molecule: 30S ribosomal protein S6
    Polymer: 7 Type: protein Length: 101
    Chains: F
    Organism Thermus thermophilus
    Gene Names rpsF TTHA0245
    UniProtKB:   Protein Feature View | Search PDB | Q5SLP8  
    Molecule: 30S ribosomal protein S7
    Polymer: 8 Type: protein Length: 156
    Chains: G
    Organism Thermus thermophilus
    Gene Names rpsG rps7 TTHA1696
    UniProtKB:   Protein Feature View | Search PDB | P17291  
    Molecule: 30S ribosomal protein S8
    Polymer: 9 Type: protein Length: 138
    Chains: H
    Organism Thermus thermophilus
    Gene Names rpsH TTHA1678
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2  
    Molecule: 30S ribosomal protein S9
    Polymer: 10 Type: protein Length: 128
    Chains: I
    Organism Thermus thermophilus
    Gene Names rpsI rps9 TTHA1464
    UniProtKB:   Protein Feature View | Search PDB | P80374  
    Molecule: 30S ribosomal protein S10
    Polymer: 11 Type: protein Length: 105
    Chains: J
    Organism Thermus thermophilus
    Gene Names rpsJ TTHA1693
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN7  
    Molecule: 30S ribosomal protein S11
    Polymer: 12 Type: protein Length: 129
    Chains: K
    Organism Thermus thermophilus
    Gene Names rpsK rps11 TTHA1666
    UniProtKB:   Protein Feature View | Search PDB | P80376  
    Molecule: 30S ribosomal protein S12
    Polymer: 13 Type: protein Length: 132
    Chains: L
    Organism Thermus thermophilus
    Gene Names rpsL TTHA1697
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN3  
    Molecule: 30S ribosomal protein S13
    Polymer: 14 Type: protein Length: 126
    Chains: M
    Organism Thermus thermophilus
    Gene Names rpsM rps13 TTHA1667
    UniProtKB:   Protein Feature View | Search PDB | P80377  
    Molecule: 30S ribosomal protein S14
    Polymer: 15 Type: protein Length: 61
    Chains: N
    Organism Thermus thermophilus
    Gene Names rpsZ rpsN TTHA1679
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ1  
    Molecule: 30S ribosomal protein S15
    Polymer: 16 Type: protein Length: 89
    Chains: O
    Organism Thermus thermophilus
    Gene Names rpsO TTHA1138
    UniProtKB:   Protein Feature View | Search PDB | Q5SJ76  
    Molecule: 30S ribosomal protein S16
    Polymer: 17 Type: protein Length: 88
    Chains: P
    Organism Thermus thermophilus
    Gene Names rpsP TTHA1035
    UniProtKB:   Protein Feature View | Search PDB | Q5SJH3  
    Molecule: 30S ribosomal protein S17
    Polymer: 18 Type: protein Length: 105
    Chains: Q
    Organism Thermus thermophilus
    Molecule: 30S ribosomal protein S18
    Polymer: 19 Type: protein Length: 88
    Chains: R
    Organism Thermus thermophilus
    Gene Names rpsR TTHA0243
    UniProtKB:   Protein Feature View | Search PDB | Q5SLQ0  
    Molecule: 30S ribosomal protein S19
    Polymer: 20 Type: protein Length: 93
    Chains: S
    Organism Thermus thermophilus
    Gene Names rpsS TTHA1688
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP2  
    Molecule: 30S ribosomal protein S20
    Polymer: 21 Type: protein Length: 106
    Chains: T
    Organism Thermus thermophilus
    Gene Names rpsT rps20 TTHA1397
    UniProtKB:   Protein Feature View | Search PDB | P80380  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2F4S   
    2F4T   
    2F4U   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AB9
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    AB9 C20 H43 N7 O8
    (2R)-4-AMINO-N-{(1R,2S,3R,4R,5S)-5-AMINO- 2-{2-[(2-AMINOETHYL)AMINO]ETHOXY}-4-[(2,6- DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]- 3-HYDROXYCYCLOHEXYL}-2-HYDROXYBUTANAMIDE
    D2C
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    D2C C21 H25 Cl N2 O7
    (2S,4S,4AR,5AS,6S,11R,11AS,12R,12AR)-7-CHLORO- 4-(DIMETHYLAMINO)-6,10,11,12-TETRAHYDROXY- 1,3-DIOXO-1,2,3,4,4A,5,5A,6,11,11A,12,12A- DODECAHYDROTETRACENE-2-CARBOXAMIDE
    K
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    K K
    POTASSIUM ION
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0134
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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