2EK1

Crystal structure of RNA-binding motif of human rna-binding protein 12

PDB DOI: https://doi.org/10.2210/pdb2EK1/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-03-22 Released: 2008-04-01
Deposition Author(s): Ihsanawati, Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.274
R-Value Work: 0.208
R-Value Observed: 0.208

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of RNA-binding motif of human rna-binding protein 12

Ihsanawati, Bessho, Y., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 80.54 kDa
Atom Count: 5,266
Modelled Residue Count: 629
Deposited Residue Count: 760
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-binding protein 12	A, B, C, D, E A, B, C, D, E, F, G, H	95	Homo sapiens	Mutation(s): 0 Gene Names: RBM12, KIAA0765
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NTZ6 (Homo sapiens) Explore Q9NTZ6 Go to UniProtKB: Q9NTZ6
PHAROS: Q9NTZ6 GTEx: ENSG00000244462
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9NTZ6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.274
R-Value Work: 0.208
R-Value Observed: 0.208
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.879	α = 90
b = 103.227	β = 91.5
c = 62.189	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-04-01

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-04-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.