2E9Z

Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, ATP and UTP

Structural Biology Knowledgebase: 2E9Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2E9Z

Classification: TRANSFERASE / RNA

Total Structure Weight: 59280.24


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-dependent RNA polymerase A 476 Foot-and-mouth disease virus EC#: 2.7.7.48 IUBMB
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3' B 9 synthetic RNA template
5'-R(*GP*GP*GP*CP*CP*CP*A)-3' C 7 synthetic RNA primer

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UTP
Query on UTP

A URIDINE 5'-TRIPHOSPHATE
C9 H15 N2 O15 P3
PGAVKCOVUIYSFO-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PPV
Query on PPV

A PYROPHOSPHATE
H4 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.227
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 94.11 α = 90.00
b = 94.11 β = 90.00
c = 99.36 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-29
  • Released Date: 2007-06-26
  • Deposition author(s): Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4