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Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog
DOI:10.2210/pdb2dtu/pdb   NDB ID: PD0837
2DTU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 455054.24
    Molecule: 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'
    Polymer: 1 Type: dna Length: 18
    Chains: E, G, I, K
    Molecule: 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'
    Polymer: 2 Type: dna Length: 15
    Chains: F, H, J, L
    Molecule: DNA polymerase
    Polymer: 3 Type: protein Length: 896
    Chains: A, B, C, D
    EC#: 2.7.7.7   
    Mutation: D222A, D327A, I253G, Deletion 254-260
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1CLQ  RB69 gp43 complexed with undamaged DNA in exonuclease active site 
    1IG9  RB69 gp43 complexed with undamaged DNA in exonuclease active site 
    1Q9X  RB69 gp43 complexeded with tetrahydrofuran containing DNA 
    1Q9Y  RB69 gp43 complexed with 8-oxoguanosine containing DNA 
    1RV2  RB69 gp43 complexed with DNA containing an abasic site analog 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
    Search 
    3DR C5 H11 O6 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0837
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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