2D7C

Crystal structure of human Rab11 in complex with FIP3 Rab-binding domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 2D7C

Classification: PROTEIN TRANSPORT

Total Structure Weight: 49213.47

Macromolecule Entities
Molecule Chains Length Organism Details
Ras-related protein Rab-11A A, B 167 Homo sapiens Fragment: residues 7-173
Mutation: Q70L
Gene Name(s): RAB11A Gene View RAB11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rab11 family-interacting protein 3 C, D 42 Homo sapiens Fragment: Rab-binding domain
Gene Name(s): RAB11FIP3 Gene View ARFO1 KIAA0665
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A, B GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.202
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 108.72 α = 90.00
b = 120.57 β = 90.00
c = 36.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-16
  • Released Date: 2006-09-26
  • Deposition author(s): Shiba, T., Koga, H., Shin, H.W., Kawasaki, M., Kato, R., Nakayama, K., Wakatsuki, S.

Revision History

  • Version 1_0: 2006-09-26

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance