2D6B

Novel Bromate Species trapped within a Protein Crystal

Structural Biology Knowledgebase: 2D6B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2D6B

Classification: HYDROLASE

Total Structure Weight: 15585.32

Macromolecule Entities
Molecule Chains Length Organism Details
lysozyme C A 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Fragment: lysozyme
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
202
Query on 202

A BROMIC ACID
Br H O3
SXDBWCPKPHAZSM-QEZKKOIZCW
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.178
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.21 α = 90.00
b = 77.21 β = 90.00
c = 38.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-10
  • Released Date: 2005-11-29
  • Deposition author(s): Ondracek, J., Mesters, J.R.

Revision History

  • 2015-09-09
    Type: Version format compliance | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4