2CZJ

Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8

Structural Biology Knowledgebase: 2CZJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.255

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2CZJ

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 137867.20


Macromolecule Entities
Molecule Chains Length Organism Details
SsrA-binding protein A, C, E, G 123 Thermus thermophilus Gene Name(s): smpB TTHA0902
Macromolecule Entities
Molecule Chains Length Organism Details
tmRNA (63-MER) B, D, F, H 63 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
5MU
Query on 5MU
B, D, F, H RNA LINKING C10 H15 N2 O9 P U
PSU
Query on PSU
B, D, F, H RNA LINKING C9 H13 N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.255
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 84.78 α = 90.00
b = 67.96 β = 90.07
c = 178.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-13
  • Released Date: 2006-10-31
  • Deposition author(s): Bessho, Y., Shibata, R., Sekine, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4